I have had similar occurrences with Windows 7 when using Thief 1 NewDark or Thief 2 NewDark. There was no recognizable pattern, only that it was not the FMs themselves that were responsible. Usually, every mission played was affected when the effect occured. The stutter often vanished after a few days, for all missions, but sometimes returned after several weeks. I never found out where the problem was. Might even be a hardware related glitch that only showed up when the moon was full and occultists were swinging dead cats over fallen old trees in the woods, or whatever...